Action 853

FAW
COST ACTION 853

ACW Agroscope Changins-Wädenswil

Swiss Federal Research Station for Horticulture

Agenda
WG 3 Meeting, June 19-20, 2006, Wageningen, the Netherlands


EUROPEAN COMMISSION
RESEARCH DIRECTORATE-GENERAL
Directorate B: European research area: structural aspects
Cost

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Meeting COST 853
Agricultural Biomarkers for Array-Technology

 

Working Group 1 nucleic acid micro-arrays
Working Group 2 protein micro-arrays

Date: June 19-20, 2006

Location: WICC (Hotel and Congress center)
Lawickse Allee 9
6701 AN Wageningen, the Netherlands

 

MONDAY JUNE 19, 2006

8.00 - 9.00 hrs. Registration

9.00 - 9.10 hrs. Opening

9.10 - 9.45 hrs. Expert lectures by invited speakers
G. Cheroutre, Sanquin Blood Supply Foundation, Amsterdam, NL
High-throughput genotyping for red cell and platelet blood group antigens by DNA
microarrays

 

9.45 - 10.20 hrs. A. van Amerongen, Agrotechnology & Food Innovations, Wageningen, NL
Rapid and simple detection of amplified mRNA/DNA using antibody microarrays and colloidal carbon nanoparticles
 
10.20 - 10.50 hrs. Coffee/Tea break
10.50 - 11.15 hrs. Presentation COST 853:
J. E. Frey, Agroscope Changins-Wädenswil Research Station ACW, Waedenswil, Switzerland
Microarrays: Which Technology for Which Application?
 

11.15 - 11.40 hrs. R. van Doorn, M. Szemes, P. Bonants, C.D. Schoen*, Plant Research International ,Wageningen UR, The Netherlands

Quantitative multiplex detection of plant pathogens using PRI-lock probes and universal, ultra-high-throughput real-time PCR on OpenArraysTM

11.40 - 12.00 hrs. T. Kostic, A. Weilharter, S. Rubino, G. Delogu, K. Rudi, A. Sessitsch and L. Bodrossy, ARC Seibersdorf research GmbH, Department of Bioresources, Seibersdorf, Austria

Development and evaluation of gyrB DNA microarray for detection of and identification of pathogenic bacteria

12.10 - 13.10 hrs. Lunch

13.10 - 13.45 hrs. Expert lectures by invited speakers
M. Rajilic-Stojanovic, H. G. H. J. Heilig, E. Zoetendal, H. Smidt, D. Molenaar and W. M. de Vos, Laboratory of Microbiology, Wageningen University, The Netherlands
Development And Application Of Hitchip - Diversity Microarray For The Human Intestinal
Microbiota
 
13.45 - 14.20 hrs. A. van Hoek, RIKILT - Institute for Food Safety, Wageningen, NL
Microarray technology to detect antibiotic resistance genes

14.20 - 14.45 hrs. Poster Discussion COST 853

14.45 - 15.15 hrs. Coffee/tea break

15.15 - 16.15 hrs. Poster Discussion COST 853

16.20 - 17.00 hrs. Poster Session

17.00 - 18.00 hrs. Management Committee meeting COST 853

18.00 hrs. Closure of day 1

19.30 hrs. Dinner (COST 853) Hotel "de Wererld", Wageningen

 

TUESDAY JUNE 20, 2006

8.30 - 9.05 hrs. Expert lectures by invited speakers
J. Bergervoet, Plant Research International BV, Wageningen, NL
Luminex immunoassays for detection of plant pathogenic organisms
 

9.05 - 9.40 hrs. C. Waalwijk, Plant Research International BV, Wageningen, NL

EU-eBIOSENSE, electrical bio-sensor arrays for the analyses of mycotoxins and toxigenic fungi
9.40 - 10.05 hrs. Presentation COST 853:
Nesme X. , Sanguin H., Gazengel K., Kyselkova M., Prigent-Combaret C., Grundmann G., Sarniguet A., Moënne-Loccoz Y. UMR CNRS 5557 and USC INRA 1193 Ecologie Microbienne, Université Lyon 1, France
Analysis of the microbial community dynamic associated to Take-All decline using 16S taxonomic microarrays

10.05 - 10.35 hrs. Coffee/tea break

10.35 - 11.10 hrs. Expert lectures by invited speakers
A. Glas, Agendia BV, Amsterdam, The Netherlands
Converting a complex profile into a simple diagnostic test
 
11.10 - 11.30 hrs. Presentation COST 853:
Oger-Desfeu C., Costechareyre D. , Chapulliot D. , Lobry J., Daubin V., Nesme X., Ecologie Microbienne UMR CNRS 5557 USC INRA, Laboratoire de Biométrie et Biologie Evolutive UMR 5558 CNRS, PRABI : Pôle Rhône-Alpes de BioInformatique

Early results of CGH on Agrobacterium tiling arrays: the lessons from a short oligo design.


11.40 - 12.00 hrs. N. Boonham*, J. Tomlinson, J.t Dukes and I. Barker, Central Science Laboratory, York, UK, Institute for Animal Health, Pirbright, UK

Detecting viruses using microarrays

 

12.00 - 13.00 hrs. Lunch

13.00 - 13.25 hrs. Presentation COST 853

Cimaglia F, D'Urso FO, Shevelev A, Logrieco A, Visconti A, Santino A, Poltronieri P.

Protein chips for screening of protease-protease inhibitor interactions.


13.25 - 13.50 hrs. M. Pompe-Novak, Š. Baebler, H. Krecic-Stres, A. Rotter, K. Gruden and M. Ravnikara, National Institute of Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
Nucleic acid microarry data analyses in potato - virus interaction studies

 

 

14.00 - 14.30 hrs. Closing remarks

14.20 - 15.00 hrs. Coffee/tea break

15.00 hrs. Departure