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Meeting
COST 853
Agricultural Biomarkers for Array-Technology
Working
Group 1 nucleic acid micro-arrays
Working Group 2 protein micro-arrays
Date: June 19-20, 2006
Location: WICC (Hotel and
Congress center)
Lawickse Allee 9
6701 AN Wageningen, the Netherlands
MONDAY JUNE 19, 2006
8.00 - 9.00 hrs. Registration
9.00 - 9.10 hrs. Opening
- 9.10 - 9.45 hrs. Expert lectures by invited
speakers
- G. Cheroutre, Sanquin Blood Supply Foundation,
Amsterdam, NL
- High-throughput
genotyping for red cell and platelet blood group antigens
by DNA
-
microarrays

- 9.45 - 10.20 hrs. A. van Amerongen,
Agrotechnology & Food Innovations, Wageningen, NL
- Rapid and simple detection of amplified mRNA/DNA
using antibody microarrays and colloidal carbon nanoparticles
-
- 10.20 - 10.50 hrs. Coffee/Tea break
- 10.50 - 11.15 hrs. Presentation
COST 853:
- J. E. Frey, Agroscope Changins-Wädenswil
Research Station ACW, Waedenswil, Switzerland
- Microarrays:
Which Technology for Which Application?
-
11.15 - 11.40 hrs. R. van Doorn, M. Szemes, P. Bonants,
C.D. Schoen*, Plant Research International ,Wageningen
UR, The Netherlands
Quantitative
multiplex detection of plant pathogens using PRI-lock
probes and universal, ultra-high-throughput real-time
PCR on OpenArraysTM

11.40 - 12.00 hrs. T. Kostic, A. Weilharter,
S. Rubino, G. Delogu, K. Rudi, A. Sessitsch and L. Bodrossy,
ARC Seibersdorf research GmbH, Department of Bioresources,
Seibersdorf, Austria
Development
and evaluation of gyrB DNA microarray for detection
of and identification of pathogenic bacteria

12.10 - 13.10 hrs. Lunch
- 13.10 - 13.45 hrs. Expert lectures by invited speakers
- M. Rajilic-Stojanovic, H. G. H. J. Heilig,
E. Zoetendal, H. Smidt, D. Molenaar and W. M. de Vos,
Laboratory of Microbiology, Wageningen University, The
Netherlands
- Development
And Application Of Hitchip - Diversity Microarray For
The Human Intestinal
- Microbiota

-
- 13.45 - 14.20 hrs. A. van Hoek, RIKILT
- Institute for Food Safety, Wageningen, NL
- Microarray technology to detect antibiotic resistance
genes
14.20 - 14.45 hrs. Poster Discussion COST 853
14.45 - 15.15 hrs. Coffee/tea break
15.15 - 16.15 hrs. Poster Discussion COST 853
16.20 - 17.00 hrs. Poster Session
17.00 - 18.00 hrs. Management Committee meeting
COST 853
18.00 hrs. Closure of day 1
19.30 hrs. Dinner (COST 853) Hotel "de Wererld",
Wageningen
TUESDAY JUNE 20, 2006
- 8.30 - 9.05 hrs. Expert lectures by invited speakers
- J. Bergervoet, Plant Research International BV,
Wageningen, NL
- Luminex
immunoassays for detection of plant pathogenic organisms

-
9.05 - 9.40 hrs. C. Waalwijk,
Plant Research International BV, Wageningen, NL
- EU-eBIOSENSE,
electrical bio-sensor arrays for the analyses of mycotoxins
and toxigenic fungi
- 9.40 - 10.05 hrs. Presentation COST
853:
- Nesme X. , Sanguin H., Gazengel
K., Kyselkova M., Prigent-Combaret C., Grundmann G., Sarniguet
A., Moënne-Loccoz Y. UMR CNRS 5557 and USC INRA 1193
Ecologie Microbienne, Université Lyon 1, France
- Analysis of the microbial community
dynamic associated to Take-All decline using 16S taxonomic
microarrays
10.05 - 10.35 hrs. Coffee/tea break
- 10.35 - 11.10 hrs. Expert lectures
by invited speakers
- A. Glas, Agendia BV, Amsterdam,
The Netherlands
- Converting a complex profile into
a simple diagnostic test
-
-
- 11.10 - 11.30 hrs. Presentation COST
853:
- Oger-Desfeu C.,
Costechareyre D. , Chapulliot D. , Lobry J., Daubin V.,
Nesme X., Ecologie Microbienne UMR CNRS 5557 USC INRA,
Laboratoire de Biométrie et Biologie Evolutive
UMR 5558 CNRS, PRABI : Pôle Rhône-Alpes de
BioInformatique
Early
results of CGH on Agrobacterium tiling arrays: the
lessons from a short oligo design.

11.40 - 12.00 hrs. N. Boonham*,
J. Tomlinson, J.t Dukes and I. Barker, Central Science
Laboratory, York, UK, Institute for Animal Health, Pirbright,
UK
Detecting
viruses using microarrays

12.00 - 13.00 hrs. Lunch
13.00 - 13.25 hrs. Presentation COST 853
- Cimaglia F, D'Urso FO, Shevelev A,
Logrieco A, Visconti A, Santino A, Poltronieri P.
-
Protein
chips for screening of protease-protease inhibitor
interactions. 
13.25 - 13.50 hrs. M. Pompe-Novak, . Baebler,
H. Krecic-Stres, A. Rotter, K. Gruden and M. Ravnikara,
National Institute of Biology, Vecna pot 111, 1000 Ljubljana,
Slovenia
- Nucleic
acid microarry data analyses in potato - virus interaction
studies

14.00 - 14.30 hrs. Closing remarks
14.20 - 15.00 hrs. Coffee/tea break
15.00 hrs. Departure
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