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Meeting COST 853
Agricultural Biomarkers for Array-Technology

WG 1 Nucleic acid microarrays and WG 2 Protein microarrays

Scientific programme:

MONDAY June 20, 2005:

8:00 - 8:45 Registration
9:00 Opening
9:00 - 10:30 Lectures by experts (3 x 25 min)
WG 1 Nucleic acid microarrays

9:00 - 9:30 Marek Figlerowicz - The application of microarray technology in the studies of plant-microbe interactions
9:30 - 10:00 P. Formanowicz - On some principles of DNA microarrays design and data analysis
10:00 - 10:30 J. Sadowski - DNA microarrays in studies of plant responses to abiotic stresses

10:30 - 11:00 Coffee/Tea

11:00 - 12:30 Lectures by experts (3 x 25 min)
WG1 Nucleic acid microarrays

11:00 - 11:30 C. Schoen - Diagnostic application of padlock probes - multiplex detection of plant pathogens using universal microarrays
WG 2 Protein microarrays

11:30 - 12:00 M. Templin - Protein microarrays: assays and systems
12:00 - 12:30 J. van der Wolf - Multiplex detection of viral and bacterial pathogens with the Luminex technology, a fluid microarray system

13:00 - 14:00 Lunch

14:00 - 15:30 Seminar presentation (4 x 20 min)
WG 1 Nucleic acid microarrays

14:00 - 14:20 N. Boonham - COST 853 plant virus nucleic acid microarray: ringtesting and results
14:20 - 14:40 J. Tomilinson - DIAG CHIP update: ring testing comparisons of slide chemistries
14:40 - 15:00 X. Nesme - title will be given later

15:00 - 15:20 M. Ravnikar - Nucleic acid microarray application to potato and grapevine pathogen interaction studies

15:30 - 16:00 Cofee/Tea

16:00 - 18:30 Management Committee meeting

19:30 Workshop Dinner

TUESDAY June 21, 2005:

8:00 - 9:00 Poster Session

9:00 - 10:40 Seminar Session (5 x 20 min)

9:00 - 9:20 L. Belbahri - A DNA Oligo Array for identification of Phytopthora spp. to the Species level
9:20 - 9:40 M. Sip - Oligonucleotide-based microarray detection of plant viruses

9:40 - 10:00 O. Lenz - Parallel detection of fruit-trees viruses by oligonucleotide microarrays

10:00 - 10:30 Coffee/Tea

10:30 - 10:50 C. Schoen - Thru-hole open array technology

10:50 - 11:10 J. Lewosz - Conductive synthetic polymers and metal nanoparticles as structural components of microarrays
11:10 - 11:30 J. Kinkorová - The importance of nonstandard methods in systematic entomology

11:30 - 12:00 Juice/Water

12:00 - 12:40 Poster Session COST 853

12:40 - 13:00 I. Barker - Plant Health ERANET proposal and funding opportunities in FP7

13:00 P. Bonants - Closing remarks

13:30 - 14:30 Lunch

14:30 - 15:00 Departure (bus to the airport)

Poster Session COST 853

1. Anna Baturo
University of Technology and Agriculture, Department of Phytopathology, Bydgoszcz, Poland
"Preliminary studies on genetic variability of Biopolaris sorokiniana isolated from spring barley by RAPD-PCR"

2. Christiane Beckmann, Guido Vogel, Valérie Lemée, Gerhard M. Kresbach, Urs Vögeli, André Herrmann
Kantonales Laboratorium Basel-Stadt, Kontrollstelle für Chemie- und Biosicherheit, Basel, Switzerland
Former Zeptosens AG, Zeptosens, a Division of Bayer (Schweiz) AG, Witterswil, Switzerland
"Development of a monitoring system for microorganisms in the environment using DNA array technology"

3. Noemi Cerovská & T. Pecenková
Institute of Experimental Botany CAS, Prague, Czech Republic
"Bacterial expression of recombinant plant viral proteins for raising antibodies"

4. Ingrid Franke-Whittle
University of Insbruck, Bauteil V, Insbruck, Austria
"Microarrays in compost"

5. Jerzy Lewosz & Tomasz Pilecki
Plant Breeding and Acclimatization Institute, Bonin, Poland
"Nanoparticles as immunosorbents and markers for detection of potato pathogens"

6. Aleksander Lukanowski
University of Technology and Agriculture, Department of Phytopathology, Bydgoszcz, Poland
"PCR assay determination of deoxynivalenol and nivalenol chemotypes of Fusarium culmorum isolates from various locations of winter wheat cultivation in Poland"

7. José E. Pérez-Ortín, Barbara M. Bono, Antonio Olmos, Ana B. Ruiz-García and Mariano Cambra
Servicio de Chips de DNA-SCSIE, Departamento de Bioquímica y Biología Molecular, Universitat de València, Valencia, Spain
Departamento de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Valencia, Spain
"Electronic DNA chip for detection of potato viruses in potato tubers"

8. Monika Pfunder & Jürg E. Frey
Agroscope FAW Wädeswil, Molekulre Diagnostik, Wädeswil, Switzerland
"Microarray based diagnostics of pest fruit flies"

9. Joanna Przysowa, A. Michta, R. Czajkowski, S. Jafra, E. Lojkowska
Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gda?sk, Gda?sk, Poland
"Analysis of the bacterium isolated from the rhizosphere and capable of degrading AHLs"

10. Angela Quarta, Giovanni Mita, Palmiro Poltronieri, Antonio Logrieco, Angelo Visconti
Institute of Sciences of Food Production - CNR, Lecce, Italy
"Oligonucleotide array technology for differentiation of Fusarium spp. belonging to the Liseola section"

11. Almira Ramanaviciene, Arnonas Finkelsteinas, Margarita Lavrik, Natalija Kurilcik, Saulius Jursenas, Arunas Ramanavicius
Institute of Immunology, Department of Analytical and Environmental Chemistry, Institute of Materials Science and Research, Vilnius University, Vilnius, Lithuania
"Conducting polymer based receptors, toward protein arrays"

12. Malgorzata Waleron, Krzysztof Waleron, Ewa Lojkowska
Department of Biotechnology, Faculty of Biotechnology University of Gdansk and Medical University of Gdansk, Gdansk, Poland
"Phylogeny of the Erwinia genus"