Action 853

FAW
COST ACTION 853

ACW Agroscope Changins-Wädenswil

Swiss Federal Research Station for Horticulture

Publications

COST853 Participants: PUBLICATIONS, BOOKS & BOOK CHAPTERS, POSTERS, ARTICLES,
ABSTRACTS, Further reading

Agricultural Biomarkers for Array Technology
2001-2007

ISBN number: 978-3-033-01770-2
PUBLICATIONS from participants  
Ahrens CH, Wagner U, Rehrauer HK, Turker C, Schlapbach R. (2007) Current challenges and approaches for the synergistic use of systems biology data in the scientific community. EXS. 97:277-307.  
Anderson N, Szemes M, O'Brien P, de Weerdt M, Schoen C, Boender P, Bonants P. (2006) Use of hybridization melting kinetics for detecting Phytophthora species using three-dimensional microarrays: demonstration of a novel concept for the differentiation of detection targets. Mycol Res. Jun;110(Pt 6):664-71  
Baayen R.P., Bonants P.J.M., Verkley G., Carroll G.C., van de Aa H.A., de Weerdt M., van Brouwershaven I.R., Schutte G.C., Maccheroni Junior W., Glienke de Blanco C., Azevedo J.L. (2002). Nonpathogenic isolates of the citrus black spot fungus, Guignardia citricarpa, identified as a cosmopolitan endophyte of woody plants, G. mangiferae (Phyllosticta capitalensis). Phytopathology 92 (5): 464-477.  
Bailey, A.M., D. J. Mitchell, K. L. Manjunath,,K.L, Nolasco, G, Niblett,.C.L. (2002) Identification to the Species Level of the Plant Pathogens Phytophthora and Pythium by Using Unique Sequences of the ITS1 Region of Ribosomal DNA as Capture Probes for PCR ELISA. FEMS Microbiology letters. 207(2) 1153-158  
Ballut L, Drucker M, Pugniere M, Cambon F, Blanc S, Roquet F, Candresse T, Schmid HP, Nicolas P, Gall OL, Badaoui S. (2005) HcPro, a multifunctional protein encoded by a plant RNA virus, targets the 20S proteasome and affects its enzymic activities. J Gen Virol. Sep;86(Pt 9):2595-603.  
Balmas V., Scherm B., Ghignone S., Salem A.O.M, Cacciola S.O., Migheli Q. (2005) Characterisation of Phoma tracheiphila by RAPD-PCR, microsatellite-primed PCR and ITS rDNA sequencing and development of specific primers for in planta PCR-detection. Eur. J. of Plant Pathol.111 (3): 235-247  
Balmas V., Scherm B., Di Primo P., Rau D., Marcello A., Migheli Q. (2004) Molecular characterization of vegetative compatibility groups in Fusarium oxysporum f. sp. radicis-lycopersici and f. sp. lycopersici by random amplification of polymorphic DNA and microsatellite-primed PCR. European Journal of Plant Pathology (in press).  
Balmas V., Scherm B., Ghignone S.,Salem A.O.M, Cacciola S.O., Migheli Q. (2004) Characterisation of Phoma tracheiphila by RAPD-PCR, microsatellite-primed PCR and ITS rDNA sequencing and development of specific primers for in planta PCR-detection. European Journal of Plant Pathology (accepted for publication).  
Bell KS, Roberts J, Verrall S, Cullen D, Williams NA, Harrison, JG, Toth IK, Cooke DEL, Duncan JM, Claxton R (1999) Detection and quantification of Spongospora subterranea f. sp. subterranea in soils and tubers using specific PCR primers. European Journal of Plant Pathology 105, 905-915.  
Bennani B, Celso Mendes C , Zemzami M, Azeddoug H and Nolasco G. (2002) Citrus variegation virus: molecular variability of a portion of the RNA 3 containing the coat protein gene and design of primers for RT-PCR detection. European Journal of Plant Pathology 108 (2): 155-162  
Bennani, B., Zemzami, M., Nolasco, G., Azedoug, H (2002). Variability of a portion of RNA 3 containing the coat protein gene of Citrus variegation virus (CVV) using single-strand conformation polymorphism (SSCP). Phytopathologia Mediterranea 41:188-192.  
Benters, R., C.M. Niemeyer, D. Drutschmann, D. Blohm and D. Wöhrle (2001): DNA Microarrays with PAMAM dentritic linker systems. Nucleic Acids Res., 30, E10.  
Bystricka D., Lenz O., Mraz I., Piherova L., Kmoch S., Sip M. (2005). Oligonucleotide-based microarray: A new improvement in microarray detection of plant viruses. Journal of Virological Methods, 128(1-2): 176-182.  
Blohm, D. and A. Guiseppi-Elie (2001): New Developments in microarray technology. Current Opinion in Biotechnology 1, 41-47.  
Boccardo G, Candresse T. (2005) Complete sequence of the RNA1 of an isolate of White clover cryptic virus 1, type species of the genus Alphacryptovirus. Arch Virol. Feb;150(2):399-402.  
Boccardo G, Candresse T. (2005) Complete sequence of the RNA2 of an isolate of White clover cryptic virus 1, type species of the genus Alphacryptovirus. Arch Virol. 2005 Feb;150(2):403-5.  
Bodrossy L and A.Sessitsch, (2004) Oligonucleotide microarrays in microbial diagnostics. Current Opinion in Microbiology, 7(3):246-255.  
Bodrossy L, Stralis-Pavese N, Konrad-Koszler M, Weilharter A, Reichenauer TG, Schofer D, Sessitsch A. (2006) mRNA-based parallel detection of active methanotroph populations by use of a diagnostic microarray. Appl Environ Microbiol. Feb;72(2):1672-6.  
Bodrossy L, Stralis-Pavese N, Murrell J C, Radjewski S, Weilharter A, Sessitsch A (2003). Development and validation of a diagnostic microbial microarray for methanotrophs. Environmental Microbiology 5: 566-582  
Boersma JG, Cooke DEL, Sivasithamparam K (2000) A Survey of Wildflower farms in the South-West of Western Australia for Phytophthora spp. associated with root rots. The Australian Journal of Experimental Agriculture 40, 1011-1019.  
Bohnebeck, U. (2001): mRNA-Signalstrukturerkennung mittels Knowledge Discovery. DISKI 249, infix Verlag  
Bonants P., Schoen C., Van der Wolf J.& Zijlstra C. (2001). Developments in detection of plant pathogens and other plant-related organisms: Detection in the past towards detection in the future. Mededelingen-Faculteit-Landbouwkundige-en-Toegepaste-Biologische-Wetenschappen-Universiteit-Gent 66 (2A): 25-37.  
Bonants P.J.M., Carroll George C., de Weerdt M., van Brouwershaven I. R. and Baayen R.P. (2003). Development and validation of a fast PCR-based detection method for pathogenic isolates of the citrus black spot fungus, Guignardia citricarpa, European Journal of Plant Pathology 109: 503-513.  
Bonants, P. J. M., van Gent Pelzer, M. P. E., Hooftman, R., Cooke, D. E. L., Guy, D. C. and Duncan, J. M. (2004). A combination of baiting and different PCR formats, including measurement of real-time quantitative fluorescence, for the detection of Phytophthora fragariae in strawberry plants. European Journal of Plant Pathology 110:689-702.  
Bonants PJM, Hagenaar De Veerdt M, Van Gent-Pelzer MP, Lacourt I, Cooke DEL, Duncan JM (1997) Detection and Identification of Phytophthora fragariae Hickman By the Polymerase Chain Reaction. European Journal of Plant Pathology. 103, 345-355  
Boonham N, Tomlinson J, Mumford R. (2007) Microarrays for rapid identification of plant viruses (1). Annu Rev Phytopathol. 2007;45:307-28  
Boonham N, Walsh K, Madagan K, Graham I, Barker I. (2003). Detection of potato viruses using microarray technology: towards a generic method for plant viral disease diagnosis. Journal of Virological Methods 108: 181-187.  
Brasier CM, Cooke DEL, Duncan, JM, Hansen EM (2003) Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile Mycological Research 107, 277-290.  
Brasier CM, Cooke DEL, Duncan JM (1999) Origin of a new Phytophthora pathogen through interspecific hybridisation. Proceedings of the National. Academy of Sciences USA. 96, 5878-5883  
Brunner, P.C., Chatzivassiliou, E.K., Katis, N.I. and Frey, J.E. (2004). Host-associated genetic differentation in Thrips tabaci (Insecta: Thysanoptera), as determined from mtDNA sequence data. Heredity 93: 364-370.  
Brzin, J., Ermacora, P., Osler, R., Loi, N., Ravnikar, M., Petrovic, N. (2003). Detection of apple proliferation phytoplasma by ELISA and PCR in growing and dormant apple trees = Nachweis des Apfeltriebsucht-Phytoplasmas durch ELISA und PCR in wachsenden und ruhenden Apfelbäumen. Z. Pflanzenkr. Pflanzenschutz (1970), , vol. 110, no. 5, str. 476-483.  
Bystricka D, Lenz O, Mraz I, Piherova L, Kmoch S, Sip M. (2005) Oligonucleotide-based microarray: a new improvement in microarray detection of plant viruses. J Virol Methods. Sep;128(1-2):176-82.  
Bystricka D, Lenz O, Mraz L, Dedic P, Sip M. (2003). DNA Microarray: parallel detection of potato viruses. Acta virologica 47: 41-44.  
Candresse, T., Lanneau, M., Revers, F., Kofalvi, S. & Macquaire, G. (2000). PCR-based techniques for the detection of plant viruses and viroids. Acta Horticulturae 530, 61-67. (Publication in extenso d'une présentation à un congrès).  
Candresse, T. (2001). Advances in the methods of pathogen detection Introductory remarks. Acta Horticulturae 550, 33-36. (Publication in extenso d'une présentation à un congrès)  
Candresse T, Svanella-Dumas L, Le Gall O. (2006) Characterization and partial genome sequence of stocky prune virus, a new member of the genus Cheravirus. Arch Virol. Jun;151(6):1179-88  
Candresse T, Lot H, German-Retana S, Krause-Sakate R, Thomas J, Souche S, Delaunay T, Lanneau M, Le Gall O. (2007) Analysis of the serological variability of Lettuce mosaic virus using monoclonal antibodies and surface plasmon resonance technology. J Gen Virol. 88(Pt 9):2605-10  
Cebron A, Bodrossy L, Chen Y, Singer AC, Thompson IP, Prosser JI, Murrell JC. (2007) Identity of active methanotrophs in landfill cover soil as revealed by DNA-stable isotope probing. FEMS Microbiol Ecol.  
Cebron A, Bodrossy L, Stralis-Pavese N, Singer AC, Thompson IP, Prosser JI, Murrell JC. (2007) Nutrient amendments in soil DNA stable isotope probing experiments reduce the observed methanotroph diversity. Appl Environ Microbiol. 73(3):798-807  
Christensen,N.M., Nicolaisen,M., Hansen,M. and Schulz, A (2003) Quantification and Localization of Phytoplasmas with Real-time (TaqMan) PCR and Bioimaging. Applied and Environmental Microbiology. Submitted.  
Christensen,N.M., Nicolaisen,M., Hansen,M. and Schulz, A (2004) Distribution of Phytoplasmas in Infected Plants as Revealed by Real-Time PCR and Bioimaging. Molecular Plant-Microbe Interactions 17: 1175-1184.  
Clerc A, Manceau C., Nesme X. (1998). Comparison of Random Amplified Polymorphism DNA (RAPD) with Amplified Fragment Lenght Polymorphism (AFLP) to assess the genetic diversity and genetic relatednesses within the genospecies III of Pseudomonas syringae (P.tomato). Appl. Environ. Microbiol. 64,1180-1187.  
Constantin, C., Krath, B.N., MacFarlane, S.A., Nicolaisen, M., Johansen, I.E., and Lund, O.S. (2004) Virus induced gene silencing as a tool for functional genomics in a legume species. The Plant Journal 40:622-631.  
Cooke DEL, Duncan JM (1997) Phylogenetic analysis of Phytophthora species based on the ITS1 and ITS2 sequences of ribosomal DNA. Mycological Research 101, 667-677.  
Cooke DEL, Jung T, Williams NA, Schubert R, Bahnweg G, Obwald W, & Duncan JM (1999) Molecular evidence supports Phytophthora quercina as a new species. Mycological Research 103, 799-804.  
Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM (2000) A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology 30, 17-32.  
Cooke DEL, Young V, Birch PRJ, Toth R, Gourlay F, Day JP, Carnegie S, Duncan JM (2003) Phenotypic and genotypic diversity of Phytophthora infestans populations in Scotland (1995-1997). Plant Pathology 52, 181-192.  
Cooke DEL, Jung T, Williams NA, Schubert R, Obwald W, Duncan JM (2003) Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. Forest Pathology (in press)  
Cooke DEL, Williams NA, Duncan JM (2003) The reliability of rDNA internal transcribed spacer sequence analysis in Phytophthora identification and taxonomy. In 'Phytophthora in Forests and Natural Ecosystems'. 2nd International IUFRO Working Party 7.02.09 Meeting, Albany, W. Australia, 2001 Eds JA McComb, GE StJ Hardy and IC Tommerup. Pp. 159-166.  
Coronado MJ, Testillano PS, Wilson C, Vicente O, Heberle-Bors E, Risueno MC. (2007) The in situ molecular identification of the Ntf4-MAP kinase expression sites in maturing and germinating pollen.
Biol Cell.
 
Decroocq V, Sicard O, Alamillo JM, Lansac M, Eyquard JP, Garcia JA, Candresse T, Le Gall O, Revers F. (2006) Multiple resistance traits control Plum pox virus infection in Arabidopsis thaliana. Mol Plant Microbe Interact. May;19(5):541-9.
 
Deyong Z, Willingmann P, Heinze C, Adam G, Pfunder M, Frey B, Frey JE (2005) Differentiation of cucumber mosaic virus isolates by hybridisation to oligonucleotides in a microarray format. Journal of Virological Methods 123: 101-108.
 
Dellagi A, Heilbronn J, Avrova AO, Montesano M, Palva ET, Stewart HE, Toth IK, Cooke DEL, Lyon GD, Birch PRJ (2000) A potato gene encoding a WRKY-like transcription factor is induced in compatible interactions with Erwinia carotovora subsp. atroseptica and Phytophthora infestans and is co-regulated with class I endo-chitinase expression. Molecular Plant Microbe Interactions 13, 1092-1101.  
Dick MA, Dobbie K, Cooke DE, Brasier CM. (2006) Phytophthora captiosa sp. nov. and P. fallax sp. nov. causing crown dieback of Eucalyptus in New Zealand. Mycol Res. Apr;110(Pt 4):393-404.  
Dolja VV, Kreuze JF, Valkonen JP. (2006) Comparative and functional genomics of closteroviruses. Virus Res. Apr;117(1):38-51.  
Donahoo R, Blomquist CL, Thomas SL, Moulton JK, Cooke DE, Lamour KH. (2006) Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycol Res. Nov;110(Pt 11):1309-22.  
van Doorn R, Szemes M, Bonants P, Kowalchuk GA, Salles JF, Ortenberg E, Schoen CD. (2007) Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArraysTM. BMC Genomics. 14;8(1):276  
Dovas, C.I. and Katis, N.I. (2003). A spot nested PCR method for the simultaneous detection of members of the Vitivirus and Foreavirus genus in grapevine. Journal of Virological Methods 107: 99-106.  
Dovas, C.I. and Katis, N.I. (2003). A spot nested RT-PCR for the simulataneous and generic detection of viruses involved in the aetiology of grapevine leafroll and rugose wood grapevine. Journal of Virological Methods 109: 217-226  
Dovas, C.I., Eythimiou, K. and Katis, N.I. (2004). Generic detection and differentiation of tobamoviruses by a spot nested RT-PCR-RFLP using dI-containing primers along with homologous dG-containing primers. Journal of Virological Methods 117: 137-144  
Dugas V., Depret G., Chevalier Y., Nesme X., Souteyrand E. (2004). Immobilization of single-stranded DNA fragments to solid surfaces and their repeatable specific hybridization: covalent binding or adsorption? Sensors and Actuators B 101:112-121  
Dugas V., Depret G., Chevalier Y., Nesme X., Souteyrand E. (2004). The immobilisation of DNA strands on silica surface by means of chemical grafting. Progr. Colloid Polym. Sci. 123: 275-279  
Eikemo H., Klemsdal S. S. Riisberg I., Bonants P., Stensvand A.& Tronsmo A. M. (2004). Genetic variation between Phytophthora cactorum isolates differing in their ability to cause crown rot in strawberry. Mycological Research 108: 317 -324.  
Elvers D., Böttger-Schnack R., Blohm D., Hagen W. (2006). Sympatric size variants of the microcopepod Oncaea venusta exhibit distinct lineages in DNA sequences. Mar Biol 149:503-513  
Fakhfakh H., Le Gall O., Candresse T. & Marrakchi M. (2001). Analysis of the variability of Tunisian isolates of Lettuce mosaic potyvirus (LMV) using biological and molecular properties. Journal of Plant Pathology 83, 3-11.  
Foissac X., Svanella-Dumas L., Dulucq M. P., Gentit P. & Candresse T. (2001). Polyvalent detection of fruit tree tricho, capillo and foveaviruses by nested RT-PCR using degenerated and inosine containing primers (PDO RT-PCR). Acta Horticulturae 550, 37-43. (Publication in extenso d'une présentation à un congrès)  
Fonseca F, Neto JD, Martins V, Nolasco G. (2005) Genomic variability of prune dwarf virus as affected by agricultural practice. Arch Virol. Aug;150(8):1607-19  
Francois C, Kebdani N, Barker I, Tomlinson J, Boonham N, Castagnone-Sereno P. (2006) Towards specific diagnosis of plant-parasitic nematodes using DNA oligonucleotide microarray technology: a case study with the quarantine species Meloidogyne chitwoodi. Mol Cell Probes. Feb;20(1):64-9.  
Franke-Whittle, I. H., S. H. Klammer, and H. Insam. 2005. Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. J Microbiol Methods 62: 37-56.  
Frey, J.E. and Pfunder, M. Molecular techniques for identification of quarantine insects and mites: The potential of microarrays. In Molecular Diagnostics: Current Technology and Applications, J.R. Rao, C. C. Fleming and J. E. Moore, Eds, Horizon Scientific Press, pp141-162.  
Frostegard A., Courtois S., Ramiise V., Clerc S., Bernillon D., Le Gall F., Jeannin P., Nesme X., Simonet P. (1999). Quantification of bias related to the extraction of DNA directly from soils. Appl. Environ. Microbiol. 65:5409-5420.  
Gammelgard E, Mohan M, Valkonen JP. (2007) Potyvirus-induced gene silencing: the dynamic process of systemic silencing and silencing suppression.
J Gen Virol. 88(Pt 8):2337-46
 
Gebhardt C, Bellin D, Henselewski H, Lehmann W, Schwarzfischer J, Valkonen JP. (2006) Marker-assisted combination of major genes for pathogen resistance in potato. Theor Appl Genet. 112(8):1458-64.  
van Gent-Pelzer MPE, van Brouwershaven IR, Kox LFF & Bonants PJM (2007) A Taqman PCR method for routine diagnosis of the quarantine fungus Guignardia citricarpa. Journal of Phytopathology 155: 357-363.  
Gentit, P., Delbos, R. P., Candresse, T. & Dunez, J. (2001). Characterisation of a new Nepovirus infecting apricot in the Southeastern France : Apricot latent ringspot virus. European Journal of Plant Pathology 107, 485-494.  
Gentit, P., Foissac, X., Svanella-Dumas, L., Peypelut, M. & Candresse, T. (2001). Characterization of two different Apricot latent virus variants associated with peach asteroid spot and peach sooty ringspot diseases. Archives of Virology 146, 1453-1464.  
Gentit, P., Foissac, X., Svanella-Dumas, L., Peypelut, M., Macquaire, G. & Candresse, T. (2002). Molecular characterization of foveaviruses associated with the cherry necrotic mottle leaf disease and complete sequencing of a Cherry green ring mottle virus European isolate. Archives of Virology 147, 1033-1042.  
Gentit, P., Foissac, X., Svanella-Dumas, L. & Candresse, T. (2001). Variants of Apricot latent foveavirus (ALV) isolated from south European orchards associated with peach asteroid spot and peach sooty ringspot diseases. Acta Horticulturae 550, 213-219. (Publication in extenso d'une présentation à un congrès)  
Gentit, P., Delbos, R. P., Candresse, T. & Dunez, J. (2001). Isolation and characterization of a new virus infecting Prunus armeniaca (apricot) and belonging to the Nepovirus genus. Acta Horticulturae 550, 169-175. (Publication in extenso d'une présentation à un congrès)  
Gentit, P., Foissac, X., Svanella-Dumas, L., Peypelut, M., Macquaire, G. & Candresse, T. (2001). Biological properties and partial molecular characterization of two foveaviruses associated with similar disorders of cherry trees. Acta Horticulturae 550, 161-168. (Publication in extenso d'une présentation à un congrès)  
Gil-Salas FM, Morris J, Colyer A, Budge G, Boonham N, Cuadrado IM, Janssen D. (2007) Development of real-time RT-PCR assays for the detection of Cucumber vein yellowing virus (CVYV) and Cucurbit yellow stunting disorder virus (CYSDV) in the whitefly vector Bemisia tabaci. J Virol Methods. Jul 10  
Giobbe S, Marceddu S, Scherm B, Zara G, Mazzarello VL, Budroni M, Migheli Q. The strange case of a biofilm-forming strain of Pichia fermentans, which controls Monilinia brown rot on apple but is pathogenic on peach fruit. FEMS Yeast Res. 2007  
Glasa M, Candresse T. (2005) Partial sequence analysis of an atypical Turkish isolate provides further information on the evolutionary history of Plum pox virus (PPV). Virus Res. Mar;108(1-2):199-206.  
Glasa M, Paunovic S, Jevremovic D, Myrta A, Pittnerova S, Candresse T. (2005) Analysis of recombinant Plum pox virus (PPV) isolates from Serbia confirms genetic homogeneity and supports a regional origin for the PPV-Rec subgroup. Arch Virol. 2005 Oct;150(10):2051-6  
Glasa M, Svanella L, Candresse T. (2006) The complete nucleotide sequence of the Plum pox virus El Amar isolate. Arch Virol. Aug;151(8):1679-82  
Góra-Sochacka, A., Candresse, T. & Zagorski, W. (2001). Genetic variability of Potato spindle tuber viroid RNA replicon. Acta Biochimica Polonica 48, 467-476.  
Gyenesei A, Wagner U, Barkow-Oesterreicher S, Stolte E, Schlapbach R. (2007) Mining co-regulated gene profiles for the detection of functional associations in gene expression data.
Bioinformatics. 23(15):1927-35.
 
Hackl E, Zechmeister-Boltenstern S, Bodrossy L, Sessitsch A. (2004 ) Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils. Appl Environ Microbiol. 70(9):5057-65  
Halstensen AS, Nordby KC, Eduard W, Klemsdal SS. (2006) Real-time PCR detection of toxigenic Fusarium in airborne and settled grain dust and associations with trichothecene mycotoxins. J Environ Monit. Dec;8(12):1235-41.  
Halstensen AS, Nordby KC, Klemsdal SS, Elen O, Clasen PE, Eduard W. (2006) Toxigenic Fusarium spp. as determinants of trichothecene mycotoxins in settled grain dust. J Occup Environ Hyg. Dec;3(12):651-9.  
Hansen, H., Brødsgaard, C.J., Kryger,P. and Nicolaisen, M. (2003). A scientific note on the presence of Paenibacillus larvae larvae spores in sub-Saharan African honey. Apidologie. 34, 471-472.  
Hao,N.G., Albrechtsen,S.E. and Nicolaisen, M. (2003) Detection and identification of the blackeye cowpea mosaic strain of Bean common mosaic virus in seeds of Vigna unguiculata sspp. from North Vietnam. Australasian Plant Pathology 32, 1-5.  
Heinze C, Lesemann DE, Ilmberger N, Willingmann P, Adam G. (2006) The phylogenetic structure of the cluster of tobamovirus species serologically related to ribgrass mosaic virus (RMV) and the sequence of streptocarpus flower break virus (SFBV). Arch Virol. Apr;151(4):763-74.  
Hoell IA, Klemsdal SS, Vaaje-Kolstad G, Horn SJ, Eijsink VG. (2005) Overexpression and characterization of a novel chitinase from Trichoderma atroviride strain P1. Biochim Biophys Acta. 2005 May 15;1748(2):180-90  
Horvàth, T., S. Wrobel and U. Bohnebeck (2001): Relational Instance-Based Learning with Lists and Terms. Machine Learning 43: 53-80.  
Hosp J, Tashpulatov A, Roessner U, Barsova E, Katholnigg H, Steinborn R, Melikant B, Lukyanov S, Heberle-Bors E, Touraev A. (2007) Transcriptional and metabolic profiles of stress-induced, embryogenic tobacco microspores. Plant Mol Biol. Jan;63(1):137-49.  
Ivors K, Garbelotto M, Vries ID, Ruyter-Spira C, Te Hekkert B, Rosenzweig N, Bonants P. (2006) Microsatellite markers identify three lineages of Phytophthora ramorum in US nurseries, yet single lineages in US forest and European nursery populations. Mol Ecol. May;15(6):1493-505.  
Ivors, K., Hayden, K., Bonants, P. J. M., Rizzo, D. M., and Garbelotto, M. (2004). AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum. Mycol. Res. 108: 378-392.  
Jadao AS, Krause-Sakate R, Liberti D, Pavan MA, Echer MM, Svanella-Dumas L, Zerbini FM, Candresse T, Le Gall O. (2007) Further characterization of two sequiviruses infecting lettuce and development of specific RT-PCR primers. Arch Virol.152(5):999-1007.  
Jafra S., van der Wolf J.M. (2004). Fast screening method for detection of acyl-HSL-degrading soil isolates. J. Microbiol. Meth., 57: 415-420.  
Jung T, Cooke DEL, Blaschke H, Duncan JM & Obwald W (1999) Phytophthora quercina sp. nov, causing root rot of European oaks. Mycological Research 103, 785-798.  
Jung T, Nechwatal J, Cooke DEL, Hartmann G, Blaschke M, Osswald W, Duncan JM, Delatour C (2003) Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous trees in Europe. Mycological Research 107, 772-789  
Justesen, A.F., Bay, A., Yohalem, D.S. and Nicolaisen, M. (2003) Genetic diversity in potato field populations of Thanatephorus cucumeris AG-3, revealed by ITS polymorphism and RAPD markers. Mycological Research. In press.  
Kausaite A, Ramanaviciene A, Mostovojus V, Ramanavicius A. [Surface plasmon resonance and its application to biomedical research]
Medicina (Kaunas). 2007;43(5):355-65
 
Kenig, M., Berbic, S., Krijestorac, A., Kroon Zitko , L., Tusek-Žnidaric , M., Pompe Novak, M., Zerrovnik, E.. (2004) Differences in aggregation properties of three site-specific mutants of recombinant human stefin B. Protein sci., , vol. 13, str. 63-70.  
Kjeldsen KU, Loy A, Jakobsen TF, Thomsen TR, Wagner M, Ingvorsen K. (2007) Diversity of sulphate-reducing bacteria from an extreme hypersaline sediment, Great Salt Lake (Utah).
FEMS Microbiol Ecol. 60(2):287-98
 
Klemsdal SS, Elen O. (2006) Development of a highly sensitive nested-PCR method using a single closed tube for detection of Fusarium culmorum in cereal samples. Lett Appl Microbiol. May;42(5):544-8.  
Klemsdal SS, Clarke JL, Hoell IA, Eijsink VG, Brurberg MB. (2006) Molecular cloning, characterization, and expression studies of a novel chitinase gene (ech30) from the mycoparasite Trichoderma atroviride strain P1. FEMS Microbiol Lett. Mar;256(2):282-9.  
Kochzius M., Blohm D. (2005). Genetic population structure of the lionfish Pterois miles (Scorpaenidae, Pteroinae) in the Gulf of Aqaba and nothern Red Sea. Gene 347: 295-301.  
Kochzius M., Nölte M., Weber H., Silkenbeumer N., Hjörleifsdottir S., Hreggvidsson G., Marteinsson V., Kappel K., Planes S., Tinti F., Magoulas A., Garcia Vazquez E., Turan C., Hervet C., Campo Falgueras D., Antoniou A., Landi M., Blohm D. (2007) Fish & Chips: Developing a DNA microarray for the identification of fishes from European seas Marine Biotechnology, submitted  
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Sanguin H, Herrera A, Oger-Desfeux C, Dechesne A, Simonet P, Navarro E, Vogel TM, Moenne-Loccoz Y, Nesme X, Grundmann GL. (2006) Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Environ Microbiol. Feb;8(2):289-307.  
Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM, Nesme X, Moenne-Loccoz Y, Grundmann GL. (2006) Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microbiol. Jun;72(6):4302-12.  
Santino A, Poltronieri P, Mita G. (2005) Advances on plant products with potential to control toxigenic fungi: a review. Food Addit Contam. Apr;22(4):389-95  
Schena L, Cooke DE. (2006) Assessing the potential of regions of the nuclear and mitochondrial genome to develop a "molecular tool box" for the detection and characterization of Phytophthora species. J Microbiol Methods. Oct;67(1):70-85  
Scherm B, Palomba M, Serra D, Marcello A, Migheli Q. (2005) Detection of transcripts of the aflatoxin genes aflD, aflO, and aflP by reverse transcription-polymerase chain reaction allows differentiation of aflatoxin-producing and non-producing isolates of Aspergillus flavus and Aspergillus parasiticus. Int J Food Microbiol. Feb 1;98(2):201-10.
 
Schubert R, Bahnweg G, Nechwatal J, Jung T, Cooke DEL, Duncan JM, Müller-Starck G., Langebartels C, Sandermann Jr H & W Oßwald (1999) Detection and quantification of Phytophthora species which are associated with root-rot diseases in European deciduous forests by species-specific PCR European Journal of Forest Pathology 29, 169-188.  
Seljak, G., Petrovic, N.(2000) Diffusione e stato della ricerca delle malattie da fitoplasmi in Slovenia = The presence of phytoplasma diseases in Slovenia and the situation of the research. Petria, , letn. 10, št. 2, str. 133-139.  
Sequeira Z, Nolasco, G . (2002) Bacterial expressed coat protein: development of a single antiserum for routine detection of Citrus Tristeza Virus. Phytopathologia Mediterranea. 41:55-62  
Sessitsch A, Hackl E, Wenzl P, Kilian A, Kostic T, Stralis-Pavese N, Sandjong BT, Bodrossy L. (2006) Diagnostic microbial microarrays in soil ecology. New Phytol.171(4):719-35  
Silva C, S. Tereso, G. Nolasco, and M. M. Oliveira. (2003). Cellular Location of Prune dwarf virus in Almond Sections by In Situ Reverse Transcription-Polymerase Chain Reaction. Phytopathology 93(3): 278-285  
Skanseng B, Kaldhusdal M, Rudi K. (2006) Comparison of chicken gut colonisation by the pathogens Campylobacter jejuni and Clostridium perfringens by real-time quantitative PCR. Mol Cell Probes. Oct;20(5):269-79.  
Skottrup P, Frokiaer H, Hearty S, O'Kennedy R, Hejgaard J, Nicolaisen M, Justesen AF. (2007) Monoclonal antibodies for the detection of Puccinia striiformis urediniospores.
Mycol Res. 111(Pt 3):332-8.
 
Skottrup P, Hearty S, Frokiaer H, Leonard P, Hejgaard J, O'Kennedy R, Nicolaisen M, Justesen AF. (2007) Detection of fungal spores using a generic surface plasmon resonance immunoassay. Biosens Bioelectron. 15;22(11):2724-9  

Skottrup P, Nicolaisen M, Justesen AF. (2007) Rapid determination of Phytophthora infestans sporangia using a surface plasmon resonance immunosensor. J Microbiol Methods. 68(3):507-15

 
Sledz W., Jarmolowicz L., Waleron M., Lojkowska E. 2003. Differentiation of Polish isolates of Erwinia carotovora subsp. atroseptica by PCR-RFLP. J. Plant Protection (submitted)  
Sledz W., Lojkowska E. Erwinia carotovora (Pectobacterium carotovorum) - detection, identification and genetic differentiation. Postepy Nauk Rolniczych. (in Polish, in press).  
Souteyrand E., Chen C., Cloarec J.P., Nesme X., Simonet P., Navarro I., Martin J.R. (2000). Comparison between Electrochemical and optoelectrochemical impedance measurements for detection of DNA hybridization. Appl. Biochem. Biotech. 89:195-207.  
Speranskaya AS, Krinitsina AA, Poltronieri P, Fasano P, Santino A, Shevelev AB, Valueva TA. (2005) Molecular cloning of Kunitz-type proteinase inhibitor group B genes from potato. Biochemistry (Mosc). Mar;70(3):292-9.  
Stralis-Pavese, N., A. Sessitsch, A. Weilharter, T. Reichenauer, J. Riesing, J. Csontos, J.C.Murrell and L.Bodrossy (2004) Optimisation of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers. Environ. Microbiol., 6(4):347-363.
 
Stackebrandt, E., W. Frederiksen, G. M. Garrity, P. Grimont, P. Kämpfer, M. C. J. Maiden, X. Nesme, R. Rosselló-Mora, J. Swings, H. G. Trüper, L. Vauterin, A. C. Ward, and W. B. Whitman. (2002). Report of the Ad Hoc Committee for the Re-Evaluation of the Species Definition in Bacteriology. Int. J. Syst. Evol. Microbiol. 52:1043-1047.  
Suarez MB, Walsh K, Boonham N, O'Neill T, Pearson S, Barker I. (2005) Development of real-time PCR (TaqMan) assays for the detection and quantification of Botrytis cinerea in planta. Plant Physiol Biochem. Sep;43(9):890-9.  
Szemes M, Bonants P, de Weerdt M, Baner J, Landegren U, Schoen CD. (2005) Diagnostic application of padlock probes--multiplex detection of plant pathogens using universal microarrays. Nucleic Acids Res. Apr 28;33(8):e70  
Szemes M; Klerks M.M; van den Heuvel J.F.J M; Schoen C.D. (2002). Development of a multiplex AmpliDet RNA assay for simultaneous detection and typing of potato virus Y isolates. Journal-of-Virological-Methods 100 (1-2): 83-96.  
Szemes M.; Schoen C.D. (2003). Design of molecular beacons for AmpliDet RNA assay: Characterization of binding stability and probe specificity. Analytical Biochemistry 315 (2): 189-201.  
Szentivanyi O, Kiss L, Russell JC, Kovacs GM, Varga K, Jankovics T, Lesemann S, Xu XM, Jeffries P. (2005) Ampelomyces mycoparasites from apple powdery mildew identified as a distinct group based on single-stranded conformation polymorphism analysis of the rDNA ITS region. Mycol Res. (2005) Apr;109(Pt 4):429-38.  
Tankouo-Sandjong B, Sessitsch A, Liebana E, Kornschober C, Allerberger F, Hachler H, Bodrossy L (2007) MLST-v, multilocus sequence typing based on virulence genes, for molecular typing of Salmonella enterica subsp. enterica serovars. J Microbiol Methods. 69(1):23-36.  
Teycheney PY, Acina I, Lockhart BE, Candresse T. (2007) Detection of Banana mild mosaic virus and Banana virus X by polyvalent degenerate oligonucleotide RT-PCR (PDO-RT-PCR).
J Virol Methods. 142(1-2):41-9
 
Teycheney PY, Laboureau N, Iskra-Caruana ML, Candresse T. (2005) High genetic variability and evidence for plant-to-plant transfer of Banana mild mosaic virus. J Gen Virol. Nov;86(Pt 11):3179-87.  
Teycheney PY, Marais A, Svanella-Dumas L, Dulucq MJ, Candresse T. (2005) Molecular characterization of banana virus X (BVX), a novel member of the Flexiviridae family. Arch Virol. Sep;150(9):1715-27  
Teyssier-Cuvelle S., Oger P., Mougel C., Groud K., Farrand S., Nesme X.( 2004). A highly selectable and highly transferable Ti plasmid to study conjugal host range and Ti plasmid dissemination in complex ecosystems. Microbial Ecology 48:10-18  
Tian YP, Liu JL, Yu XQ, Lei LP, Zhu XP, Valkonen JP, Li XD.(2007) Molecular diversity of tobacco vein banding mosaic virus. Arch Virol. Jul 2
 
Tobler NE, Pfunder M, Herzog K, Frey JE, Altwegg M. (2006) Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray. J Microbiol Methods. Jul;66(1):116-24.
 
Tomlinson JA, Boonham N, Hughes KJ, Griffin RL, Barker I. (2005) On-site DNA extraction and real-time PCR for detection of Phytophthora ramorum in the field. Appl Environ Microbiol. Nov;71(11):6702-10.  
Torres E, Bertolini E, Cambra M, Monton C, Martin MP. (2005) Real-time PCR for simultaneous and quantitative detection of quarantine phytoplasmas from apple proliferation (16 SrX) group. Mol Cell Probes. Oct;19(5):334-40.  
Treimo J, Vegarud G, Langsrud T, Marki S, Rudi K. (2006) Total bacterial and species-specific 16S rDNA micro-array quantification of complex samples. J Appl Microbiol. May;100(5):985-98.  
Varveri, C., Peypelut, M., Le Gall, O. & Candresse, T., (2003). Molecular characterization of Greek Lettuce mosaic virus isolates. Hellenic Virology, in press.  
Vogel J., Normand P., Thioulouse J., Nesme X., Grundmann G. (2003). Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil. Appl. Environ. Microbiol. 69:1482-1487.  
Waalwij C; van der Heide R; de Vries I; van der Lee T; Schoen- C; Costrel de Corainville G; Hauser Hahn I; Kastelein P; Koh J; Lonnet P; Demarque T; Kema GHJ.( 2004). Quantitative detection of Fusarium species in wheat using TaqMan. EUROPEAN-JOURNAL-OF-PLANT-PATHOLOGY 110 (5-6): 481-494.  
Waleron M, Waleron K, Lojkowska E (2002). Genotyping of bacteria belonging to the former Erwinia genus by PCR-RFLP analysis of recA gene fragment. Microbiology UK 148: 583 - 595  
Waleron M., Waleron K., Lojkowska E., (2003). Genotypic characterisation of the Erwinia genus by PCR-RFLP analysis of rpoS gene ?  
Waleron M., Waleron K., Lojkowska E. (2004). Characteristics, identification, differentiation and taxonomy of pathogenic bacteria from the genus Erwinia. Postepy Mikrobiologi, (in Polish, in press).  
Waleron K, Waleron M, Osipiuk J, Podhajska AJ, Lojkowska E. (2006) Identification of a DNA restriction-modification system in Pectobacterium carotovorum strains isolated from Poland. J Appl Microbiol. Feb;100(2):343-51.
 
Wander JGN, van den Berg W, van den Boogert PHJF, Lamers JG, van Leeuwen GCM, Hendrickx G and Bonants P. (2007) A novel technique using the Hendrickx centrifuge for extracting winter sporangia of Synchytrium endobioticum form soil. European Journal of Plant Pathology 119:165-174.  
White NA, Dehal PK, Duncan JM, Williams NA, Gartland JS, Palfreyman JW, Cooke DEL (2001) Molecular analysis of intraspecific variation between building and 'wild' isolates of Serpula lacrymans and their relatedness to Serpula himantioides. Mycological Research 105, 447-452.  
Wiejacha K., Szkuta G., Orlikowski L.B., Orlikowska T., (2004). Phytophthora spp.- patogens of trees and shrubs. Detection and identification. Biotechnologia 3(66): 55-68 (in Polish)  
Wiejacha K., Trzewik A., Orlikowski L.B., Szkuta G., Orlikowska T., (2004). Genotypic differences between isolates of Phytophthora cinnamomi Rands and P. citricola Sawada obtained from twelve nursery plant species. J. Plant Protection Res. 44 (3): 173-182  
Wiejacha K., Szkuta G., Orlikowska T., (2002). Optimization of DNA isolation procedure as the first step in identification of Phytophthora spp. Bull. Polish Acad. Sci. 50: 165-171  
Wiesinger-Mayr Herbert, Vierlinger Klemens, Pichler Rudolf , Kriegner Albert, M Hirschl Alexander, Presterl Elisabeth, Bodrossy Leventeand NoehammerChrista (2007) Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition. BMC Microbiology , 7:78
 
Yang, Z., Nicolaisen, M, Hobbs, W., Sattler, S., Olszewski, N.E. and Lockhart B.E.L.(2003). Complete Nucleotide Sequence of Kalanchoë Top-Spotting Virus (Genus Badnavirus) and Detection by PCR of Two Forms of the Virus in Kalanchoë blossfeldiana. Phytopathology. Submitted.  
Yohalem, D.S., Nielsen, K. and Nicolaisen, M (2003) Clarification of the taxonomic relationhips among onion neck rot Botrytis spp.: B. allii is an interspecific hybrid of B. aclada and B. byssoidea. Mycotaxon 85: 175-182.  
Yu XQ, Lan YF, Wang HY, Liu JL, Zhu XP, Valkonen JP, Li XD. (2007) The complete genomic sequence of Tobacco vein banding mosaic virus and its similarities with other potyviruses.
Virus Genes.
 
Zerrovnik, E., Pompe Novak, M., Skarabot, M., Ravnikar, M., Musevic, I., Turk, V. (2002) Human stefin B readily forms amyoid fibrils in vitro. Biochim. biophys. acta, Prot. struct. mol. enzymol.. [Print ed.], , vol. 1594, no. 1, str. 1-5.  
Zerrovnik, E., Zavasnik Bergant, V., Kopitar-Jerala, N., Pompe Novak, M, Skarabot, M., Goldie, K., Ravnikar, M., Musevic, I., Turk, V. (2002). Amyloid fibril formation by human stefin B in vitro : immunogold labelling and comparison to stefin A. Biol Chem,, vol. 383, str. 859-863.  
Zierer A., Reineke A., Drutschmann D., Blohm D., Pigeot I. (2007). Normalisierungs-Methoden für one-channel Microarrays in der Organismen-Identifikation.GMS Medizinische Informatik, Biometrie und Epidemiologie 3: 1 - 11.  
Zimmermann P, Schildknecht B, Craigon D, Garcia-Hernandez M, Gruissem W, May S, Mukherjee G, Parkinson H, Rhee S, Wagner U, Hennig L. (2006) MIAME/Plant - adding value to plant microarrray experiments. Plant Methods. Jan 9;2:1.  
Zimnoch-Guzowska E., Lojkowska E. Perombelon M. (2004). Resistance in Potato to Bacterial Pathogens. In: Genetic Improvement of Solanaceous Crops. Vol. 1 Potato. Red. M.K. Razdan & K. Mattoo. Oxford & IBH Publishing Co. (in press).  
   
BOOKS & BOOK CHAPTERS from participants  
Baebler Š., Hren M., Kogovšek, P., Krecic Stres, H., Curk, T., Juvan P., Zupan B., Pompe Novak M., Gruden K. 2005. Laboratory and computer practice protocols. Ljubljana: Department of Plant Physiology and Biotechnology, National Institute of Biology, 37 p.  

Bodrossy L , Diagnostic oligonucleotide microarrays for microbiology In: E.Blalock (ed.): A Beginner's Guide to Microarrays, Kluwer Academic Publishers, New York. 2003.
http://www.wkap.nl/prod/b/1-4020-7472-7

 
German-Retana, S., Candresse, T. & Martelli, G. P. (2001). Trichoviruses. In Encyclopedia of Plant Pathology. Edited by O. C. Maloy & T. D. Murray: Wiley, New York, pp 1046-1047.  
German-Retana, S., Candresse, T. & Martelli, G. P. (2001). Capilloviruses. In Encyclopedia of Plant Pathology. Edited by O. C. Maloy & T. D. Murray: Wiley, New York, pp 177-179.  
Hadidi, A. & Candresse, T. (2001). Plum pox virus. In Encyclopedia of Plant Pathology. Edited by O. C. Maloy & T. D. Murray: Wiley, New York, pp 788-791.  
Hadidi, A. & Candresse, T. (2001). Virus detection - PCR. In Encyclopedia of Plant Pathology. Edited by O. C. Maloy & T. D. Murray: Wiley, New York, pp 1095-1100.  
Hadidi, A. & Candresse, T., (2003). Polymerase chain reaction. In "Viroids", A. Hadidi, R. Flores, J.W. Randles & J.S. Semancik Eds, CSIRO Publishing & Science Publishers Inc., pp 115-122.  
Nesme X., Leclerc M.C., Bardin R. (1990). PCR detection of an original endosymbiont : the Ti plasmid of Agrobacterium tumefaciens. In : Endocytobiology IV, IVth international colloquium on endocytobiology and symbiosis, 4-8 Juil. 1989, INSA-INRA, Lyon-Villeurbanne, France.P. Nardon, V. Gianinazzi-Pearson, A.M. Grenier, L. Margulis, D.C. Smith ed., Editions INRA, Paris, p. 47-50.  
Nesme X., Simonet P., Jocteur-Monrozier L., Normand P. (1993). La PCR appliquée à l'étude des bactéries du sol. In : La PCR un procédé de réplication in vitro, D. Larzul ed., Technique & Documentation, Lavoisier, Paris, pp. 262-272.  
Nesme X., Picard C., Simonet P. (1995). Specific DNA sequences for detection of soil bacteria. In : Nucleic acids in the environment, J.T. Trevor, J.D. van Elsas ed., Springer-Verlag, Berlin, p. 111-139.  
Normand P., Ponsonnet C., Nesme X., Neyra M., Simonet P. (1996). ITS analysis of prokaryotes. In : Molecular Microbial Ecology Manual, A.D.L. Akkermans, J.D. van Elsas, F.J. de Bruijn ed., Kluwer Academic Publishers, Dordrecht, The Netherlands 3.4.5:1-12.  
Nesme X., Normand P. Easy individual strain and community typing by rDNA ITS1 analysis. (2004). In : Molecular Microbial Ecology Manual, 2nd edition, G. Kowalchuk ed., Kluwer Academic Publishers, Dordrecht, The Netherlands (in press).  
Pallas, V., Gomez, G., Amari, K., Canizares, M.C. & Candresse, T., (2003). Hop stunt viroid in apricot and almond. In "Viroids", A. Hadidi, R. Flores, J.W. Randles & J.S. Semancik Eds, CSIRO Publishing & Science Publishers Inc., pp 168-170.  
Picard C., Nesme X., Simonet P. (1996). Detection and enumeration of soil bacteria using the MPN-PCR technique. In : Molecular Microbial Ecology Manual, A.D.L. Akkermans, J.D. van Elsas, F.J. de Bruijn ed., Kluwer Academic Publishers, Dordrecht, The Netherlands 2.7.3:1-9.  
Martelli, G.P., Agranovsky, A.A., Bar-Joseph, M., Boscia, D., Candresse, T., Coutts, R.H.A., Dolja, V.V., Duffus, J.E., Falks, B.W., Gonsalves, D., Jelkmann, W., Karasev, A.V., Minafra, A., Murant, A., Namba, S., Niblett, C.L., Vetten , H.J. & Yoshikawa, N. (2000). Closteroviridae. In Virus taxonomy, Seventh report of the international committee on taxonomy of viruses, M.H.V. van Regenmortel, C.M. Fauquet, D.H.L. Bishop, E.B. carstens, M.K. Estes, S.M. Lemon, J. Maniloff, M.A. Mayo, D.J. McGeoch, C.R. Pringle & R.B. Wickner Eds, Academic Press, pp 943-952.  
Martelli, G.P., Agranovsky, A.A., Bar-Joseph, M., Boscia, D., Candresse, T., Coutts, R.H.A., Dolja, V.V., Duffus, J.E., Falks, B.W., Gonsalves, D., Jelkmann, W., Karasev, A.V., Minafra, A., Murant, A., Namba, S., Niblett, C.L., Vetten , H.J. & Yoshikawa, N. (2000). Capillovirus. In Virus taxonomy, Seventh report of the international committee on taxonomy of viruses, M.H.V. van Regenmortel, C.M. Fauquet, D.H.L. Bishop, E.B. carstens, M.K. Estes, S.M. Lemon, J. Maniloff, M.A. Mayo, D.J. McGeoch, C.R. Pringle & R.B. Wickner Eds, Academic Press, pp 952-956.  
Martelli, G.P., Agranovsky, A.A., Bar-Joseph, M., Boscia, D., Candresse, T., Coutts, R.H.A., Dolja, V.V., Duffus, J.E., Falks, B.W., Gonsalves, D., Jelkmann, W., Karasev, A.V., Minafra, A., Murant, A., Namba, S., Niblett, C.L., Vetten , H.J. & Yoshikawa, N. (2000). Trichovirus. In Virus taxonomy, Seventh report of the international committee on taxonomy of viruses, M.H.V. van Regenmortel, C.M. Fauquet, D.H.L. Bishop, E.B. carstens, M.K. Estes, S.M. Lemon, J. Maniloff, M.A. Mayo, D.J. McGeoch, C.R. Pringle & R.B. Wickner Eds, Academic Press, pp 956-960.  
Martelli, G.P., Agranovsky, A.A., Bar-Joseph, M., Boscia, D., Candresse, T., Coutts, R.H.A., Dolja, V.V., Duffus, J.E., Falks, B.W., Gonsalves, D., Jelkmann, W., Karasev, A.V., Minafra, A., Murant, A., Namba, S., Niblett, C.L., Vetten , H.J. & Yoshikawa, N. (2000). Vitivirus. In Virus taxonomy, Seventh report of the international committee on taxonomy of viruses, M.H.V. van Regenmortel, C.M. Fauquet, D.H.L. Bishop, E.B. carstens, M.K. Estes, S.M. Lemon, J. Maniloff, M.A. Mayo, D.J. McGeoch, C.R. Pringle & R.B. Wickner Eds, Academic Press, pp 960-964.  
Martelli, G. P. & Candresse, T. (2002). Closteroviridae. In Encyclopedia of Life Sciences (www.els.net), pp. 608-613: Macmillan Publishers, Basingstoke, UK.  
   

POSTERS from participants

COST Action 853 - Agricultural Biomarkers for Array-Technology Version2004
Chairman: Jürg E. Frey, Vice-Chairman: Günter Adam, Scientific secretary: Butkje Stol

Bodrossy Levente, Nancy Stralis-Pavese and Angela Sessitsch. Diagnostic microbial microarrays

Bohnebeck, U. and T. Wetjen (2001): Effective Pre- and Post-Processing for the Determination of Highly Sensitive Oligonucleotides to be used on DNA-Microarrays. Poster: "German Conference on Bioinformatics (BCB)", 7-10 October 2001, Braunschweig  
Bohnebeck, U., D. Drutschmann and T. Wetjen (2001): Determination of Classificatory Motifs for the Identification of Organisms Using DNA Chips: Poster: "ISMB" 21-25 July 2001, Kopenhagen  
Drutschmann, D., M. Nölte, L. Boldt, H. Gersdorf und D. Blohm (2001): DNA-Mikroarray zum Nachweis und zur Gentypisierung von Hepatitis C Viren. Poster: "Vom Genom zum Proteon", DECHEMA 01/ 2001.  
Drutschmann, D. and Blohm, D. (2003) Towards a DNA-Micorarray for the identification and genotyping of the Hepatitis C Virus (HCV). Poster: Statusseminar "Chiptechnologien" der DECHEMA, 24.-25.02.2003, Frankfurt  
Glöckner, C., A. Schaffrath, H. Neve and D. Blohm (2002): Functional analysis of the sequence of the lactococcal phage P482. Poster: FEMS-Meeting "7th Symposium on Lactic Acid Bacteria", 1-5 September 2002, Egmond aan Zee, Niederlande  
Simona Greco, Mariateresa Volpicella, Luigi Ceci, Barbara Kludkiewicz, Palmiro Poltronieri, Angelo Santino. Analysis of interactions of protease inhibitors with proteases in a high-throughput format
Kappel, K., H. v. Westernhagen and D. Blohm (2002): First Step to Develop a DNA-Microarray for Identifying Fish Species. Poster: "BioCon Valleyâ" Biosystems Biotechnology Bioengineering, 12-14 September 2002, Rostock.  
Kappel, K, von Westernhagen, H. and Blohm, D. (2003): Microarray-based identification of eggs and larvae from fish species common in the North Sea. Poster: Statusseminar "Chiptechnologien" der DECHEMA, 24.-25.02.2003, Frankfurt  
Niemeyer, C.M., B. Ceyhan, M. Adler, R. Benters and R. Wacker (2002): DNA-Directed Immobilization (DDI); Fabrication of Antibody Microarrays for Immunological Diagnostics and Proteom Research. Poster: Statusseminar "Chiptechnologien" der DECHEMA, 21.-22.01.2002, Frankfurt.  
Peplies, J., F.O. Glöckner, D. Blohm and R. Amann (2003): Oligonucleotide microarrays: a high-throughput tool for the detection of microorganisms. Poster: "Jahrestagung der VAAM", 23.-26.03.2003, Berlin.  
Peplies, J., R. Amann and F.O. Glöckner (2002): DNA microarrays for the specific detection of 16S rDNA targets. Poster: "Jahrestagung der VAAM", 24.-27.03.2002, Göttingen  
Monika Pfunder, Otto Holzgang and Jürg E. Frey, "Mammalia-Chip": Diagnostics of the Future?
Wegner, M., M. Gheorghe, D. Blohm und G. Gauglitz (2003): Parallele zeitaufgelöste Detektion von DNA-DNA-Wechselwirkungen durch markierungsfreie Reflektometrische Interferenzspektroskopie. Poster: Statusseminar "Chiptechnologien" der DECHEMA, 24.-25.02.2003, Frankfurt.

 

 
ARTICLES from participants  
Anche per le piante diagnosi più precoci - Le tecnologie microarray sono adesso in grado di riconoscere un'ampia gamma di agenti nocivi
Quirico Migheli,
"La Stampa" 25 September 2002, p. 4
   
ABSTRACTS from participants  
BALMAS V., SCHERM B., MIGHELI Q. (2003) Characterization of isolates of Phoma tracheiphila by RAPD-PCR, microsatellite-primed PCR and rDNA ITS1/ITS2 sequencing. Atti X Convegno Nazionale SI.Pa.V., 1-3 October 2003, Sorrento, Italy, Journal of Plant Pathology 85: 312.  
BALMAS V., SCHERM B., SALEM A. O. M., CACCIOLA S. O., MIGHELI Q. (2004) Characterisation of isolates of Phoma tracheiphila by RAPD-PCR, microsatellite-primed PCR and rDNA ITS1/ITS2 sequencing and development of specific primers for in planta detection. Proceedings 7th European Conference on Fungal Genetics, April 16-21, 2004, Copenhagen, Denmark  
Bystricka D., Lenz O., Mraz I., Petrzik K. and Sip M.: Parallel detection of potato pathogens, in Proc. 4th Int. Symposium Recent Advances in Plant Biotechnology, Ed. J. Briza, p.38, Trebon 2001  
DEMONTIS M.A., SCHERM B., GRECO S., POLTRONIERI P., MIGHELI Q. (2004) Design of a macroarray for the analysis of Trichoderma harzianum-Rhizoctonia solani interaction. Proceedings COST 853 Combined Meeting of Working Group 1 and Fourth Management Committee Meeting, September 16-17, 2004, Helsinki, Finland  
DEMONTIS M.A., BALMAS V., CHESSA V., SCHERM B., CACCIOLA S.O., MIGHELI Q. (2004) Development of specific primers for in planta detection of Phoma tracheiphila by PCR. Atti XI Convegno Nazionale SI.Pa.V., September 29-October 2, Milano, Italy.  
GHIGNONE S., MIGHELI Q. (2004) The database of PCR primers for phytopathogenic fungi. Proceedings 7th European Conference on Fungal Genetics, April 16-21, 2004, Copenhagen, Denmark  
GHIGNONE S., MIGHELI Q. (2004) The database of PCR primers for phytopathogenic fungi. Atti XI Convegno Nazionale SI.Pa.V., September 29-October 2, Milano, Italy.  
GRECO S, VOLPICELLA M, CECI L, KLUDKIEWITZ B, POLTRONIERI P., SANTINO A. (2003). Analysis of interactions of protease inhibitors with proteases in a high-throughput format. 29.9-2.10.2003. (powerpoint available on COST 853 website)  
GRECO S, CAPPELLO MS, BARUZZI F, MOREA M, POLTRONIERI P. (2003). Analysis and identification of Lactobacillus strains using species-specific fluorescent probes in an array format. Bioarrays Europe, Cambridge 29.9-2.102003  
GRECO S, CHIESA M, MARSIGLIANTE S., P. POLTRONIERI, LEO G. (2003). An oligonucleotide array for screening and typing breast cancer cells. BioarraysEurope, Cambridge 29.9-2.10.2003  
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